Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773645

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773645


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M272Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000277701 novel transcript 2.8074 0.0000
2 ENSG00000235334 BTG3P1 BTG anti-proliferation factor 3 pseudogene 1 2.3219 0.0002
3 ENSG00000239395 novel protein 2.2146 0.0000
4 ENSG00000241128 OR14A2 olfactory receptor family 14 subfamily A member 2 2.2146 0.0000
5 ENSG00000226705 SDCBPP1 syndecan binding protein pseudogene 1 2.0000 0.0000
6 ENSG00000236085 ACTG1P4 actin gamma 1 pseudogene 4 2.0000 0.0016
7 ENSG00000236243 RPL6P29 ribosomal protein L6 pseudogene 29 2.0000 0.0000
8 ENSG00000255196 OR4A17P olfactory receptor family 4 subfamily A member 17 pseudogene 2.0000 0.0016
9 ENSG00000255418 LINC02718 long intergenic non-protein coding RNA 2718 1.8813 0.0000
10 ENSG00000279029 TEC 1.8700 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000261014 LINC02165 long intergenic non-protein coding RNA 2165 -2.0575 0.2495
63172 ENSG00000269586 CT45A10 cancer/testis antigen family 45 member A10 -2.0574 0.0000
63171 ENSG00000232981 MTCO1P51 MT-CO1 pseudogene 51 -2.0572 0.0119
63170 ENSG00000232411 novel transcript -2.0572 0.3950
63169 ENSG00000251585 ash2 (absent, small, or homeotic)-like (Drosophila) (ASH2L) pseudogene -2.0566 0.6290
63168 ENSG00000249678 novel transcript -2.0566 0.6290
63167 ENSG00000212442 RNU6-243P RNA, U6 small nuclear 243, pseudogene -2.0566 0.6290
63166 ENSG00000280417 TEC -2.0564 0.0000
63165 ENSG00000238731 RNU7-90P RNA, U7 small nuclear 90 pseudogene -2.0563 0.0000
63164 ENSG00000111052 LIN7A lin-7 homolog A, crumbs cell polarity complex component -2.0563 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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