Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773646

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773646


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M273Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000215112 FAM74A1 family with sequence similarity 74 member A1 3.4594 0.0000
2 ENSG00000278475 novel transcript, sense intronic to ARID2 3.0000 0.0000
3 ENSG00000197023 OR51A6P olfactory receptor family 51 subfamily A member 6 pseudogene 2.8074 0.0000
4 ENSG00000214194 SMIM30 small integral membrane protein 30 2.7500 0.0000
5 ENSG00000202374 Small nucleolar RNA SNORA62/SNORA6 family 2.5850 0.0000
6 ENSG00000233393 novel transcript 2.5850 0.0001
7 ENSG00000243886 mitochondrial carrier homolog 2 (C. elegans) (MTCH2) pseudogene 2.5850 0.0001
8 ENSG00000249135 RB1-inducible coiled-coil 1 (RB1CC1) pseudogene 2.5850 0.0001
9 ENSG00000267146 novel transcript, antisense to WDR7 2.5850 0.0001
10 ENSG00000274183 H2AB1 H2A.B variant histone 1 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000251248 novel transcript -2.1887 0.2519
63172 ENSG00000244545 novel transcript -2.1887 0.0117
63171 ENSG00000199932 RNU1-18P RNA, U1 small nuclear 18, pseudogene -2.1887 0.0178
63170 ENSG00000107262 BAG1 BAG cochaperone 1 -2.1883 0.0000
63169 ENSG00000130054 FAM155B family with sequence similarity 155 member B -2.1882 0.0000
63168 ENSG00000271943 tropomyosin 4 (TPM4) pseudogene -2.1875 0.0000
63167 ENSG00000254006 novel transcript -2.1872 0.0000
63166 ENSG00000184221 OLIG1 oligodendrocyte transcription factor 1 -2.1865 0.0000
63165 ENSG00000277436 REXO1L5P REXO1 like 5, pseudogene -2.1861 0.0029
63164 ENSG00000204071 TCEAL6 transcription elongation factor A like 6 -2.1856 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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