Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773647

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773647


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M274Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000197320 C3 and PZP-like, alpha-2-macroglobulin domain containing 8 (CPAMD8) pseudogene 3.1640 0.0000
2 ENSG00000258342 novel transcript, sense overlapping BRMS1L 2.8074 0.0000
3 ENSG00000273825 otopetrin 1 (OTOP1) pseudogene 2.8074 0.0000
4 ENSG00000179452 LINC01699 long intergenic non-protein coding RNA 1699 2.5850 0.0000
5 ENSG00000254021 novel transcript 2.5850 0.0000
6 ENSG00000229876 CASC20 cancer susceptibility 20 2.3219 0.0000
7 ENSG00000232100 LINC01653 long intergenic non-protein coding RNA 1653 2.3219 0.0002
8 ENSG00000255094 novel transcript 2.3219 0.0002
9 ENSG00000255210 polymerase (RNA) II (DNA directed) polypeptide E, 25kDa (POLR2E) pseudogene 2.3219 0.0002
10 ENSG00000259179 UBE2CP4 ubiquitin conjugating enzyme E2 C pseudogene 4 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000158050 DUSP2 dual specificity phosphatase 2 -2.1796 0.0000
63172 ENSG00000160131 VMA21 vacuolar ATPase assembly factor VMA21 -2.1784 0.0000
63171 ENSG00000102178 UBL4A ubiquitin like 4A -2.1783 0.0000
63170 ENSG00000264484 RN7SL697P RNA, 7SL, cytoplasmic 697, pseudogene -2.1782 0.0000
63169 ENSG00000236200 KDM4A-AS1 KDM4A antisense RNA 1 -2.1780 0.0000
63168 ENSG00000144802 NFKBIZ NFKB inhibitor zeta -2.1776 0.0000
63167 ENSG00000215368 BOD1P2 biorientation of chromosomes in cell division 1 pseudogene 2 -2.1765 0.0000
63166 ENSG00000271400 CCDC121P1 CCDC121 pseudogene 1 -2.1761 0.0001
63165 ENSG00000221394 MIR1229 microRNA 1229 -2.1757 0.0000
63164 ENSG00000107362 ABHD17B abhydrolase domain containing 17B, depalmitoylase -2.1755 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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