Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773648

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773648


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M275Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000223597 LINC02142 long intergenic non-protein coding RNA 2142 3.0419 0.0000
2 ENSG00000249865 novel transcript 3.0419 0.0000
3 ENSG00000254075 IGLVV-66 immunoglobulin lambda variable (V)-66 (pseudogene) 3.0060 0.0000
4 ENSG00000271486 NIPA2P3 NIPA2 pseudogene 3 3.0000 0.0003
5 ENSG00000253874 IGLVIV-66-1 immunoglobulin lambda variable (IV)-66-1 (pseudogene) 2.8806 0.0000
6 ENSG00000206672 Y RNA 2.8074 0.0010
7 ENSG00000254866 DEFB109D defensin beta 109D (pseudogene) 2.7925 0.0000
8 ENSG00000280136 novel transcript 2.6365 0.0000
9 ENSG00000238231 interferon-induced transmembrane protein pseudogene 2.6176 0.0000
10 ENSG00000199622 RN7SKP20 RN7SK pseudogene 20 2.5850 0.0033

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000284159 MIR3940 microRNA 3940 -1.6549 0.0000
63172 ENSG00000158234 FAIM Fas apoptotic inhibitory molecule -1.6542 0.0000
63171 ENSG00000254208 novel transcript, antisense to E2F5 -1.6541 0.0000
63170 ENSG00000161955 TNFSF13 TNF superfamily member 13 -1.6541 0.0000
63169 ENSG00000165194 PCDH19 protocadherin 19 -1.6541 0.0000
63168 ENSG00000268804 LINC02132 long intergenic non-protein coding RNA 2132 -1.6537 0.0000
63167 ENSG00000141232 TOB1 transducer of ERBB2, 1 -1.6532 0.0000
63166 ENSG00000124257 NEURL2 neuralized E3 ubiquitin protein ligase 2 -1.6522 0.0000
63165 ENSG00000148053 NTRK2 neurotrophic receptor tyrosine kinase 2 -1.6521 0.0000
63164 ENSG00000178896 EXOSC4 exosome component 4 -1.6518 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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