Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773649

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773649


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M276Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000266645 MIR4299 microRNA 4299 3.4594 0.0000
2 ENSG00000227023 OR51A3P olfactory receptor family 51 subfamily A member 3 pseudogene 3.3219 0.0000
3 ENSG00000201059 RNA5SP336 RNA, 5S ribosomal pseudogene 336 3.1699 0.0000
4 ENSG00000256162 SMLR1 small leucine rich protein 1 3.1699 0.0000
5 ENSG00000264379 Small nucleolar RNA SNORD55/SNORD39 3.0000 0.0000
6 ENSG00000269397 novel transcript, sense intronic to ZNF726 3.0000 0.0000
7 ENSG00000250375 novel transcript 2.9359 0.0000
8 ENSG00000109181 UGT2B10 UDP glucuronosyltransferase family 2 member B10 2.8074 0.0000
9 ENSG00000228597 MTND4P1 MT-ND4 pseudogene 1 2.8074 0.0000
10 ENSG00000232447 MTND5P3 MT-ND5 pseudogene 3 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000183090 FREM3 FRAS1 related extracellular matrix 3 -2.4254 0.0000
63172 ENSG00000264012 novel transcript, antisense to GATA6 -2.4252 0.0000
63171 ENSG00000267630 ATPase, aminophospholipid transporter, class I, type 8 pseudogene -2.4239 0.0000
63170 ENSG00000185290 NUPR2 nuclear protein 2, transcriptional regulator -2.4239 0.0000
63169 ENSG00000207119 Small nucleolar RNA U3 -2.4239 0.0000
63168 ENSG00000187010 RHD Rh blood group D antigen -2.4236 0.0000
63167 ENSG00000252892 RNU6-548P RNA, U6 small nuclear 548, pseudogene -2.4231 0.0000
63166 ENSG00000166557 TMED3 transmembrane p24 trafficking protein 3 -2.4220 0.0000
63165 ENSG00000159873 CCDC117 coiled-coil domain containing 117 -2.4219 0.0000
63164 ENSG00000119900 OGFRL1 opioid growth factor receptor like 1 -2.4217 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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