Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773650

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773650


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M277Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000265102 MIR3942 microRNA 3942 3.3219 0.0000
2 ENSG00000169327 OR5AU1 olfactory receptor family 5 subfamily AU member 1 3.1699 0.0000
3 ENSG00000189043 NDUFA4 NDUFA4 mitochondrial complex associated 3.0000 0.0000
4 ENSG00000201529 Y RNA 3.0000 0.0000
5 ENSG00000212518 RNU11-5P RNA, U11 small nuclear 5, pseudogene 3.0000 0.0000
6 ENSG00000258605 DYNLL1P2 dynein light chain LC8-type 1 pseudogene 2 3.0000 0.0000
7 ENSG00000259502 protein kinase C, eta (PRKCH) pseudogene 3.0000 0.0000
8 ENSG00000259648 high mobility group box 1 (HMGB1) pseudogene 3.0000 0.0000
9 ENSG00000271185 novel transcript 3.0000 0.0000
10 ENSG00000281228 NA 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000230306 BANF1P2 BANF1 pseudogene 2 -2.1658 0.0000
63172 ENSG00000253736 novel transcript, antisense to DUSP1 -2.1654 0.0172
63171 ENSG00000213386 family with sequence similarity 58, member A (FAM58A) pseudogene -2.1654 0.0172
63170 ENSG00000117399 CDC20 cell division cycle 20 -2.1652 0.0000
63169 ENSG00000102753 KPNA3 karyopherin subunit alpha 3 -2.1651 0.0000
63168 ENSG00000260618 novel transcript, antisense to KIAA1370 -2.1636 0.0000
63167 ENSG00000236459 HNRNPA1P22 heterogeneous nuclear ribonucleoprotein A1 pseudogene 22 -2.1636 0.0000
63166 ENSG00000196388 INCA1 inhibitor of CDK, cyclin A1 interacting protein 1 -2.1634 0.0000
63165 ENSG00000162980 ARL5A ADP ribosylation factor like GTPase 5A -2.1633 0.0000
63164 ENSG00000012660 ELOVL5 ELOVL fatty acid elongase 5 -2.1629 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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