Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773651

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773651


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M278Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235001 EIF4A1P2 eukaryotic translation initiation factor 4A1 pseudogene 2 2.0172 0.0000
2 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 1.8919 0.0000
3 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 1.7646 0.0000
4 ENSG00000274559 histone H2B type F-S-like 1.5850 0.0003
5 ENSG00000284135 MIR3654 microRNA 3654 1.4736 0.0000
6 ENSG00000253676 TAGLN2P1 transgelin 2 pseudogene 1 1.4391 0.0000
7 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 1.3566 0.0000
8 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 1.2074 0.0000
9 ENSG00000206950 Y RNA 1.1705 0.0000
10 ENSG00000229927 RHEBP1 RHEB pseudogene 1 1.1536 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000258875 novel transcript, antisense to GPR68 -2.1418 0.0000
63172 ENSG00000099849 RASSF7 Ras association domain family member 7 -2.1410 0.0000
63171 ENSG00000279036 TEC -2.1409 0.0000
63170 ENSG00000169750 RAC3 Rac family small GTPase 3 -2.1398 0.0000
63169 ENSG00000119283 TRIM67 tripartite motif containing 67 -2.1395 0.0000
63168 ENSG00000245748 novel transcript, antisense to TBC1D14 and TADA2B -2.1392 0.0000
63167 ENSG00000274292 novel transcript -2.1388 0.0000
63166 ENSG00000175874 CREG2 cellular repressor of E1A stimulated genes 2 -2.1386 0.0000
63165 ENSG00000142684 ZNF593 zinc finger protein 593 -2.1384 0.0000
63164 ENSG00000187902 SHISA7 shisa family member 7 -2.1383 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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