Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773652

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773652


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M279Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.4233 0.0000
2 ENSG00000229927 RHEBP1 RHEB pseudogene 1 2.0829 0.0000
3 ENSG00000174384 PMS2P6 PMS1 homolog 2, mismatch repair system component pseudogene 6 2.0000 0.0000
4 ENSG00000259169 GNRHR2P1 GNRHR2 pseudogene 1 1.7552 0.0000
5 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 1.7345 0.0000
6 ENSG00000229638 RPL4P4 ribosomal protein L4 pseudogene 4 1.6520 0.0000
7 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 1.5941 0.0000
8 ENSG00000205989 DEFB109C defensin beta 109C 1.5850 0.0167
9 ENSG00000212441 RNU6-1269P RNA, U6 small nuclear 1269, pseudogene 1.5850 0.0167
10 ENSG00000264192 RN7SL117P RNA, 7SL, cytoplasmic 117, pseudogene 1.5850 0.0003

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000277553 NA -2.0172 0.0000
63172 ENSG00000259822 kinase suppressor of ras 1 (KSR1) pseudogene -2.0170 0.0000
63171 ENSG00000273137 novel transcript, antisense to SELO -2.0167 0.0000
63170 ENSG00000238280 novel transcript -2.0166 0.0000
63169 ENSG00000219492 C2H2 zinc finger protein pseudogene -2.0164 0.0000
63168 ENSG00000255808 PDE2A-AS1 PDE2A antisense RNA 1 -2.0159 0.0000
63167 ENSG00000169184 MN1 MN1 proto-oncogene, transcriptional regulator -2.0150 0.0000
63166 ENSG00000188536 HBA2 hemoglobin subunit alpha 2 -2.0150 0.0000
63165 ENSG00000184471 C1QTNF8 C1q and TNF related 8 -2.0148 0.0000
63164 ENSG00000264177 novel transcript -2.0142 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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