Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773653

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773653


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M280Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255633 MTRNR2L9 MT-RNR2 like 9 2.6530 0.0000
2 ENSG00000235735 RPL7AP72 ribosomal protein L7a pseudogene 72 2.5850 0.0000
3 ENSG00000242118 RN7SL201P RNA, 7SL, cytoplasmic 201, pseudogene 2.5850 0.0001
4 ENSG00000231570 PPIAP63 peptidylprolyl isomerase A pseudogene 63 2.4037 0.0000
5 ENSG00000187871 GFRAL GDNF family receptor alpha like 2.3219 0.0000
6 ENSG00000223684 IFNWP18 interferon omega 1 pseudogene 18 2.3219 0.0004
7 ENSG00000236848 RPL23AP95 ribosomal protein L23a pseudogene 95 2.3219 0.0004
8 ENSG00000237089 PCNPP4 PEST containing nuclear protein pseudogene 4 2.3219 0.0000
9 ENSG00000243601 RPL12P24 ribosomal protein L12 pseudogene 24 2.3219 0.0000
10 ENSG00000274680 MYO5BP1 myosin VB pseudogene 1 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000224519 HMGN1P19 high mobility group nucleosome binding domain 1 pseudogene 19 -2.3956 0.0000
63172 ENSG00000180694 TMEM64 transmembrane protein 64 -2.3953 0.0000
63171 ENSG00000277971 novel protein -2.3951 0.0000
63170 ENSG00000201852 RNU6-702P RNA, U6 small nuclear 702, pseudogene -2.3950 0.0000
63169 ENSG00000246695 RASSF8-AS1 RASSF8 antisense RNA 1 -2.3949 0.0000
63168 ENSG00000168267 PTF1A pancreas associated transcription factor 1a -2.3947 0.0000
63167 ENSG00000115665 SLC5A7 solute carrier family 5 member 7 -2.3942 0.0000
63166 ENSG00000229571 PRAMEF25 PRAME family member 25 -2.3941 0.0000
63165 ENSG00000228686 novel transcript -2.3941 0.0000
63164 ENSG00000120833 SOCS2 suppressor of cytokine signaling 2 -2.3940 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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