Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773655

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773655


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M282Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251051 ELL2P2 elongation factor for RNA polymerase II 2 pseudogene 2 3.0112 0.0000
2 ENSG00000264232 LINC01916 long intergenic non-protein coding RNA 1916 3.0000 0.0000
3 ENSG00000275810 MIR8082 microRNA 8082 2.9282 0.0000
4 ENSG00000214903 RPS15AP3 ribosomal protein S15a pseudogene 3 2.8074 0.0000
5 ENSG00000232728 PHB2P1 prohibitin 2 pseudogene 1 2.8074 0.0000
6 ENSG00000251489 solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 (SLC25A16) pseudogene 2.8074 0.0000
7 ENSG00000259133 novel transcript, antisense to TMEM260 2.8074 0.0000
8 ENSG00000251529 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 2.7925 0.0000
9 ENSG00000270683 FAM71BP1 family with sequence similarity 71 member B pseudogene 1 2.6667 0.0000
10 ENSG00000138472 GUCA1C guanylate cyclase activator 1C 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000270177 novel transcript -2.5062 0.0000
63172 ENSG00000165175 MID1IP1 MID1 interacting protein 1 -2.5059 0.0000
63171 ENSG00000113389 NPR3 natriuretic peptide receptor 3 -2.5057 0.0000
63170 ENSG00000146676 PURB purine rich element binding protein B -2.5054 0.0000
63169 ENSG00000243018 novel transcript -2.5051 0.0000
63168 ENSG00000109132 PHOX2B paired like homeobox 2B -2.5049 0.0000
63167 ENSG00000112715 VEGFA vascular endothelial growth factor A -2.5046 0.0000
63166 ENSG00000105376 ICAM5 intercellular adhesion molecule 5 -2.5045 0.0000
63165 ENSG00000028116 VRK2 VRK serine/threonine kinase 2 -2.5043 0.0000
63164 ENSG00000250149 novel transcript -2.5030 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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