Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773657

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773657


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M284Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.5200 0.0000
2 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.0597 0.0000
3 ENSG00000232472 EEF1B2P3 eukaryotic translation elongation factor 1 beta 2 pseudogene 3 1.8371 0.0000
4 ENSG00000225466 OFD1P10Y OFD1 pseudogene 10 Y-linked 1.7925 0.0001
5 ENSG00000205609 EIF3CL eukaryotic translation initiation factor 3 subunit C like 1.5850 0.0213
6 ENSG00000225740 ELOCP6 elongin C pseudogene 6 1.5850 0.0213
7 ENSG00000229521 MYCBP2-AS2 MYCBP2 antisense RNA 2 1.5850 0.0005
8 ENSG00000229600 novel transcript 1.5850 0.0213
9 ENSG00000229709 USP9YP36 USP9Y pseudogene 36 1.5850 0.0005
10 ENSG00000238489 RNU6-749P RNA, U6 small nuclear 749, pseudogene 1.5850 0.0213

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000239112 SNORD123 small nucleolar RNA, C/D box 123 -2.0106 0.0000
63172 ENSG00000237941 KCNQ1DN KCNQ1 downstream neighbor -2.0104 0.0000
63171 ENSG00000239255 pseudogene similar to part of guanine nucleotide binding protein (G protein), beta polypeptide 1GNB1 -2.0103 0.0000
63170 ENSG00000162676 GFI1 growth factor independent 1 transcriptional repressor -2.0100 0.0000
63169 ENSG00000254013 MAP2K1P1 mitogen-activated protein kinase kinase 1 pseudogene 1 -2.0096 0.0000
63168 ENSG00000230314 ELOVL2-AS1 ELOVL2 antisense RNA 1 -2.0092 0.0000
63166 ENSG00000202512 RN7SKP230 RN7SK pseudogene 230 -2.0086 0.0000
63165 ENSG00000261798 novel transcript, antisense to BMP8B -2.0077 0.0000
63164 ENSG00000248564 novel pseudogene -2.0076 0.0000
10 ENSG00000238489 RNU6-749P RNA, U6 small nuclear 749, pseudogene 1.5850 0.0213

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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