Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773658

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773658


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M285Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212187 NA 2.8074 0.0000
2 ENSG00000270759 OOEPP1 OOEP pseudogene 1 2.7416 0.0000
3 ENSG00000201744 RNU6-34P RNA, U6 small nuclear 34, pseudogene 2.5850 0.0002
4 ENSG00000207632 MIR588 microRNA 588 2.5850 0.0002
5 ENSG00000228519 RANBP1P1 RANBP1 pseudogene 1 2.5204 0.0000
6 ENSG00000186943 OR13C8 olfactory receptor family 13 subfamily C member 8 2.5192 0.0000
7 ENSG00000251735 NA 2.3949 0.0000
8 ENSG00000212321 Small nucleolar RNA U3 2.3219 0.0011
9 ENSG00000231388 FMN2P1 FMN2 pseudogene 1 2.3219 0.0011
10 ENSG00000239205 LINC02023 long intergenic non-protein coding RNA 2023 2.3219 0.0011

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000252121 RNU6-970P RNA, U6 small nuclear 970, pseudogene -2.1500 0.0000
63172 ENSG00000259706 HSP90B2P heat shock protein 90 beta family member 2, pseudogene -2.1495 0.0000
63171 ENSG00000233017 novel transcript, antisense to RBBP8NL -2.1494 0.0000
63170 ENSG00000258413 novel transcript -2.1489 0.0000
63169 ENSG00000244748 RN7SL153P RNA, 7SL, cytoplasmic 153, pseudogene -2.1466 0.0000
63168 ENSG00000244740 ribosomal protein L31 (RPL31) pseudogene -2.1463 0.0000
63167 ENSG00000282375 novel transcript -2.1459 0.0000
63166 ENSG00000158164 TMSB15A thymosin beta 15a -2.1458 0.0000
63165 ENSG00000246523 FZD4-DT FZD4 divergent transcript -2.1457 0.0000
63164 ENSG00000112309 B3GAT2 beta-1,3-glucuronyltransferase 2 -2.1456 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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