Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773659

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773659


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M286Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212187 NA 3.3219 0.0000
2 ENSG00000237873 DLGAP5P2 DLGAP5 pseudogene 2 2.9886 0.0000
3 ENSG00000152931 PART1 prostate androgen-regulated transcript 1 2.8074 0.0000
4 ENSG00000224471 MTCO3P19 MT-CO3 pseudogene 19 2.8074 0.0000
5 ENSG00000226056 MTND4P32 MT-ND4 pseudogene 32 2.8074 0.0000
6 ENSG00000228316 MTATP6P19 MT-ATP6 pseudogene 19 2.8074 0.0000
7 ENSG00000232035 novel transcript 2.8074 0.0000
8 ENSG00000234886 MTND5P26 MT-ND5 pseudogene 26 2.8074 0.0000
9 ENSG00000237628 MTCO2P19 MT-CO2 pseudogene 19 2.8074 0.0000
10 ENSG00000273701 NA 2.8074 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000132819 RBM38 RNA binding motif protein 38 -2.2404 0.0000
63172 ENSG00000128652 HOXD3 homeobox D3 -2.2402 0.0000
63171 ENSG00000277705 ovostatin (OVOS) pseudogene -2.2396 0.0000
63170 ENSG00000253293 HOXA10 homeobox A10 -2.2396 0.0000
63169 ENSG00000178401 DNAJC22 DnaJ heat shock protein family (Hsp40) member C22 -2.2395 0.0000
63168 ENSG00000106004 HOXA5 homeobox A5 -2.2394 0.0000
63167 ENSG00000105793 GTPBP10 GTP binding protein 10 -2.2389 0.0000
63166 ENSG00000181472 ZBTB2 zinc finger and BTB domain containing 2 -2.2370 0.0000
63165 ENSG00000236311 TLX1NB TLX1 neighbor -2.2368 0.0000
63164 ENSG00000231264 ARAFP1 ARAF pseudogene 1 -2.2367 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...