Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773660

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773660


Profile download
7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M287Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000137745 MMP13 matrix metallopeptidase 13 3.1943 0.0000
2 ENSG00000104047 DTWD1 DTW domain containing 1 2.9110 0.0000
3 ENSG00000249353 NPM1P27 nucleophosmin 1 pseudogene 27 2.8552 0.0000
4 ENSG00000260747 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1 (ATP5F1) pseudogene 2.8343 0.0000
5 ENSG00000179101 H3P47 H3 histone pseudogene 47 2.8074 0.0001
6 ENSG00000206716 RNU6-133P RNA, U6 small nuclear 133, pseudogene 2.8074 0.0001
7 ENSG00000259149 novel transcript 2.8074 0.0000
8 ENSG00000273360 novel transcript, antisense to CTNNA3 2.8074 0.0001
9 ENSG00000282924 ankyrin repeat domain 36 (ANKRD36) pseudogene 2.8074 0.0000
10 ENSG00000228232 GAPDHP1 glyceraldehyde-3-phosphate dehydrogenase pseudogene 1 2.6636 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000153179 RASSF3 Ras association domain family member 3 -2.1484 0.0000
63172 ENSG00000258534 novel transcript -2.1481 0.0000
63171 ENSG00000274270 novel transcript, sense intronic to DLEU1 -2.1474 0.0000
63170 ENSG00000231992 novel transcript -2.1469 0.0000
63169 ENSG00000128595 CALU calumenin -2.1469 0.0000
63168 ENSG00000172493 AFF1 AF4/FMR2 family member 1 -2.1468 0.0000
63167 ENSG00000244399 RN7SL251P RNA, 7SL, cytoplasmic 251, pseudogene -2.1465 0.0000
63166 ENSG00000176058 TPRN taperin -2.1465 0.0000
63165 ENSG00000227199 ST7-AS1 ST7 antisense RNA 1 -2.1464 0.0000
63164 ENSG00000218792 HSPD1P16 heat shock protein family D (Hsp60) member 1 pseudogene 16 -2.1462 0.0002

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...