Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773661

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773661


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7020001000000000000000-715Sequence Read ArchiveSRP074598SRP074598_M288Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeICMHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000229730 zinc finger protein 595 (ZNF595) pseudogene 2.8074 0.0000
2 ENSG00000235721 pseudogene similar to part of zinc finger protein 532 (ZNF532) 2.8074 0.0000
3 ENSG00000258184 RAB2A, member RAS oncogene family (RAB2A) pseudogene 2.6962 0.0000
4 ENSG00000283041 eukaryotic translation elongation factor 1 gamma ( 2.5144 0.0000
5 ENSG00000214182 PTMAP5 prothymosin alpha pseudogene 5 2.3522 0.0000
6 ENSG00000224401 RPL7P57 ribosomal protein L7 pseudogene 57 2.3219 0.0000
7 ENSG00000224873 CDY13P chromodomain Y-linked 13 pseudogene 2.3219 0.0009
8 ENSG00000230411 OR3D1P olfactory receptor family 3 subfamily D member 1 pseudogene 2.3219 0.0000
9 ENSG00000230814 USP9YP24 USP9Y pseudogene 24 2.3219 0.0009
10 ENSG00000243705 ribosomal protein L39 (RPL39) pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000152127 MGAT5 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase -2.0073 0.0000
63172 ENSG00000178803 ADORA2A-AS1 ADORA2A antisense RNA 1 -2.0073 0.0000
63171 ENSG00000171772 SYCE1 synaptonemal complex central element protein 1 -2.0073 0.0000
63170 ENSG00000163064 EN1 engrailed homeobox 1 -2.0070 0.0000
63169 ENSG00000233203 DHCR24-DT DHCR24 divergent transcript -2.0065 0.0000
63168 ENSG00000188816 HMX2 H6 family homeobox 2 -2.0065 0.0000
63167 ENSG00000172780 RAB43 RAB43, member RAS oncogene family -2.0064 0.0000
63166 ENSG00000224513 novel transcript -2.0061 0.0000
63165 ENSG00000170604 IRF2BP1 interferon regulatory factor 2 binding protein 1 -2.0054 0.0000
63164 ENSG00000260473 novel transcript -2.0046 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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