Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773662

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773662


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M289Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000212441 RNU6-1269P RNA, U6 small nuclear 1269, pseudogene 1.5850 0.0165
2 ENSG00000225397 pseudogene similar to part of ornithine aminotransferase (gyrate atrophy) (OAT) 1.5850 0.0165
3 ENSG00000243695 TGF beta-inducible nuclear protein 1 (TINP1) pseudogene 1.5850 0.0003
4 ENSG00000269833 novel zinc finger protein pseudogene 1.5850 0.0000
5 ENSG00000207874 MIR610 microRNA 610 1.3900 0.0000
6 ENSG00000129862 VCY1B variable charge Y-linked 1B 1.2925 0.0021
7 ENSG00000199001 MIR448 microRNA 448 1.2925 0.0021
8 ENSG00000270074 novel transcript 1.2925 0.0021
9 ENSG00000259086 KIAA1143P1 KIAA1143 pseudogene 1 1.2667 0.0000
10 ENSG00000244389 RN7SL242P RNA, 7SL, cytoplasmic 242, pseudogene 1.2233 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000109220 CHIC2 cysteine rich hydrophobic domain 2 -2.0005 0.0000
63172 ENSG00000274445 testis specific protein, Y-linked 1 (TSPY1) pseudogene -2.0000 1.0000
63171 ENSG00000200153 RNU6-23P RNA, U6 small nuclear 23, pseudogene -2.0000 0.0000
63170 ENSG00000207955 novel transcript -1.9998 0.0000
63169 ENSG00000281131 SCHLAP1 SWI/SNF complex antagonist associated with prostate cancer 1 -1.9998 0.0000
63168 ENSG00000225258 novel transcript -1.9998 0.0000
63167 ENSG00000181754 AMIGO1 adhesion molecule with Ig like domain 1 -1.9997 0.0000
63166 ENSG00000230314 ELOVL2-AS1 ELOVL2 antisense RNA 1 -1.9996 0.0000
63165 ENSG00000260810 novel transcript -1.9993 0.0000
63164 ENSG00000100084 HIRA histone cell cycle regulator -1.9991 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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