Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773663

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773663


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M290Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000255477 novel transcript 3.4594 0.0000
2 ENSG00000249847 novel transcript 3.1699 0.0000
3 ENSG00000198523 PLN phospholamban 2.5850 0.0000
4 ENSG00000212611 Small nucleolar RNA SNORD30 2.5850 0.0000
5 ENSG00000219284 novel pseudogene 2.5850 0.0000
6 ENSG00000277797 novel transcript 2.5850 0.0000
7 ENSG00000278011 novel transcript 2.5000 0.0000
8 ENSG00000254919 novel transcript 2.4387 0.0000
9 ENSG00000257302 FAHD2P1 fumarylacetoacetate hydrolase domain containing 2 pseudogene 1 2.4175 0.0000
10 ENSG00000182365 OR5F2P olfactory receptor family 5 subfamily F member 2 pseudogene 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000281005 LINC00921 long intergenic non-protein coding RNA 921 -1.9941 0.0000
63172 ENSG00000214290 COLCA2 colorectal cancer associated 2 -1.9940 0.0000
63171 ENSG00000173357 RNA binding motif protein, Y-linked, family 1, member A1 (RBMY1A1) pseudogene -1.9932 0.2447
63170 ENSG00000164442 CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 -1.9928 0.0000
63169 ENSG00000260714 thyroid hormone receptor interactor 11 (TRIP11) pseudogene -1.9924 0.0000
63168 ENSG00000228803 MTCYBP42 MT-CYB pseudogene 42 -1.9924 0.1582
63167 ENSG00000279305 TEC -1.9914 0.3856
63166 ENSG00000272508 novel transcript -1.9914 0.0035
63165 ENSG00000259844 GNPATP glyceronephosphate O-acyltransferase pseudogene -1.9914 0.3856
63164 ENSG00000240089 BMS1P3 BMS1 pseudogene 3 -1.9914 0.0035

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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