Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773664

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773664


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M291Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273487 novel transcript 2.8074 0.0000
2 ENSG00000233750 CICP27 capicua transcriptional repressor pseudogene 27 2.5850 0.0000
3 ENSG00000239767 novel transcript 2.5850 0.0001
4 ENSG00000249904 chromosome 1 open reading frame 146 pseudogene 2.5850 0.0001
5 ENSG00000259810 novel transcript 2.5850 0.0000
6 ENSG00000196507 TCEAL3 transcription elongation factor A like 3 2.3219 0.0000
7 ENSG00000205186 FABP9 fatty acid binding protein 9 2.3219 0.0007
8 ENSG00000223269 RN7SKP53 RN7SK pseudogene 53 2.3219 0.0000
9 ENSG00000237353 PATE4 prostate and testis expressed 4 2.3219 0.0007
10 ENSG00000249425 LINC02477 long intergenic non-protein coding RNA 2477 2.3219 0.0007

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000243207 PPAN-P2RY11 PPAN-P2RY11 readthrough -2.0175 0.0000
63172 ENSG00000257378 novel transcript, antisense to AQP5 and AQP2 -2.0174 0.0000
63171 ENSG00000202474 RNA5SP283 RNA, 5S ribosomal pseudogene 283 -2.0174 0.0000
63170 ENSG00000255272 novel transcript -2.0173 0.0000
63169 ENSG00000173227 SYT12 synaptotagmin 12 -2.0168 0.0000
63168 ENSG00000272444 novel transcript -2.0167 0.0000
63167 ENSG00000215769 ARHGAP27P1-BPTFP1-KPNA2P3 ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene -2.0167 0.0000
63166 ENSG00000183644 HOATZ HOATZ cilia and flagella associated protein -2.0165 0.0000
63165 ENSG00000136352 NKX2-1 NK2 homeobox 1 -2.0163 0.0000
63164 ENSG00000178538 CA8 carbonic anhydrase 8 -2.0161 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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