Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773665

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773665


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M292Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000216378 arginase, type II (ARG2) pseudogene 2.5850 0.0000
2 ENSG00000229641 CYP2C56P cytochrome P450 family 2 subfamily C member 56, pseudogene 2.5850 0.0000
3 ENSG00000232549 SRD5A1P1 steroid 5 alpha-reductase 1 pseudogene 1 2.5850 0.0000
4 ENSG00000251578 TRBV21-1 T cell receptor beta variable 21-1 (pseudogene) 2.5850 0.0000
5 ENSG00000153140 CETN3 centrin 3 2.3219 0.0000
6 ENSG00000200278 RNA5SP352 RNA, 5S ribosomal pseudogene 352 2.3219 0.0001
7 ENSG00000214074 RPL23AP39 ribosomal protein L23a pseudogene 39 2.3219 0.0000
8 ENSG00000224488 SAMM50P1 SAMM50 sorting and assembly machinery component pseudogene 1 2.3219 0.0000
9 ENSG00000226405 hydroxysteroid (17-beta) dehydrogenase 12 (HSD17B12) pseudogene 2.3219 0.0001
10 ENSG00000229636 KRT8P21 keratin 8 pseudogene 21 2.3219 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000270648 CYP2C61P cytochrome P450 family 2 subfamily C member 61, pseudogene -2.0000 1.0000
63172 ENSG00000270192 MRPS35P3 mitochondrial ribosomal protein S35 pseudogene 3 -2.0000 1.0000
63171 ENSG00000266502 MIR5681A microRNA 5681a -2.0000 1.0000
63170 ENSG00000265734 MIR4438 microRNA 4438 -2.0000 1.0000
63169 ENSG00000259228 HNRNPA1P62 heterogeneous nuclear ribonucleoprotein A1 pseudogene 62 -2.0000 0.6122
63168 ENSG00000255428 novel transcript, sense intronic to POU2AF1 -2.0000 1.0000
63167 ENSG00000255210 polymerase (RNA) II (DNA directed) polypeptide E, 25kDa (POLR2E) pseudogene -2.0000 1.0000
63166 ENSG00000254203 IGHVII-33-1 immunoglobulin heavy variable (II)-33-1 (pseudogene) -2.0000 0.2629
63165 ENSG00000253960 novel transcript -2.0000 0.3904
63164 ENSG00000253680 solute carrier family 33 (acetyl-CoA transporter), member 1 (SLC33A1) pseudogene -2.0000 0.6122

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...