Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773666

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773666


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M293Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201420 RNA5SP512 RNA, 5S ribosomal pseudogene 512 3.0000 0.0000
2 ENSG00000251489 solute carrier family 25 (mitochondrial carrier; Graves disease autoantigen), member 16 (SLC25A16) pseudogene 2.8074 0.0000
3 ENSG00000200107 RNU6-1249P RNA, U6 small nuclear 1249, pseudogene 2.6274 0.0000
4 ENSG00000262135 GARS1P1 glycyl-tRNA synthetase 1 pseudogene 1 2.6274 0.0000
5 ENSG00000214684 ANKRD49P4 ANKRD49 pseudogene 4 2.5850 0.0000
6 ENSG00000180481 GLIPR1L2 GLIPR1 like 2 2.3219 0.0000
7 ENSG00000183310 OR2T34 olfactory receptor family 2 subfamily T member 34 2.3219 0.0000
8 ENSG00000226388 ELL2P4 elongation factor for RNA polymerase II 2 pseudogene 4 2.3219 0.0003
9 ENSG00000230300 STARD13-IT1 STARD13 intronic transcript 1 2.3219 0.0003
10 ENSG00000235721 pseudogene similar to part of zinc finger protein 532 (ZNF532) 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000224592 MIR3659HG MIR3659 host gene -2.0758 0.0000
63172 ENSG00000265971 novel transcript -2.0758 0.0000
63171 ENSG00000271093 IGLCOR22-2 immunoglobulin lambda constant/OR22-2 (pseudogene) -2.0757 0.0000
63170 ENSG00000114383 TUSC2 tumor suppressor 2, mitochondrial calcium regulator -2.0757 0.0000
63169 ENSG00000272325 NUDT3 nudix hydrolase 3 -2.0753 0.0000
63168 ENSG00000272772 novel protein -2.0746 0.0000
63167 ENSG00000166165 CKB creatine kinase B -2.0736 0.0000
63166 ENSG00000270177 novel transcript -2.0730 0.0000
63165 ENSG00000105131 EPHX3 epoxide hydrolase 3 -2.0729 0.0000
63164 ENSG00000260260 SNHG19 small nucleolar RNA host gene 19 -2.0723 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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