Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773668

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773668


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M295Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000258600 novel transcript 3.1699 0.0000
2 ENSG00000259231 5-azacytidine induced 2 (AZI2) pseudogene 2.8074 0.0000
3 ENSG00000206639 Y RNA 2.5850 0.0000
4 ENSG00000234842 MTCO2P16 MT-CO2 pseudogene 16 2.5850 0.0000
5 ENSG00000241018 RCC2P5 regulator of chromosome condensation 2 pseudogene 5 2.5850 0.0000
6 ENSG00000229910 HNRNPA1P18 heterogeneous nuclear ribonucleoprotein A1 pseudogene 18 2.3219 0.0002
7 ENSG00000235735 RPL7AP72 ribosomal protein L7a pseudogene 72 2.3219 0.0000
8 ENSG00000242326 MCUR1P2 MCUR1 pseudogene 2 2.3219 0.0000
9 ENSG00000252220 RNU6-977P RNA, U6 small nuclear 977, pseudogene 2.3219 0.0000
10 ENSG00000253625 IGKV2-23 immunoglobulin kappa variable 2-23 (pseudogene) 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000271732 novel transcript -2.1224 0.0000
63172 ENSG00000138166 DUSP5 dual specificity phosphatase 5 -2.1223 0.0000
63171 ENSG00000254826 novel transcript -2.1220 0.0000
63170 ENSG00000173868 PHOSPHO1 phosphoethanolamine/phosphocholine phosphatase 1 -2.1218 0.0000
63169 ENSG00000230869 AGAP10P ArfGAP with GTPase domain, ankyrin repeat and PH domain 10, pseudogene -2.1216 0.0000
63168 ENSG00000043591 ADRB1 adrenoceptor beta 1 -2.1212 0.0000
63167 ENSG00000113119 TMCO6 transmembrane and coiled-coil domains 6 -2.1211 0.0000
63166 ENSG00000204619 PPP1R11 protein phosphatase 1 regulatory inhibitor subunit 11 -2.1209 0.0000
63165 ENSG00000147955 SIGMAR1 sigma non-opioid intracellular receptor 1 -2.1208 0.0000
63164 ENSG00000168621 GDNF glial cell derived neurotrophic factor -2.1200 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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