Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773669

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773669


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M296Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000236193 LINC01953 long intergenic non-protein coding RNA 1953 2.5850 0.0002
2 ENSG00000222560 RNU4-43P RNA, U4 small nuclear 43, pseudogene 2.0000 0.0000
3 ENSG00000250768 DPP3P1 DPP3 pseudogene 1 2.0000 0.0058
5 ENSG00000174384 PMS2P6 PMS1 homolog 2, mismatch repair system component pseudogene 6 1.5850 0.0010
6 ENSG00000196620 UGT2B15 UDP glucuronosyltransferase family 2 member B15 1.5850 0.0010
7 ENSG00000235699 CXorf51B chromosome X open reading frame 51B 1.5850 0.0322
8 ENSG00000278825 RN7SL640P RNA, 7SL, cytoplasmic 640, pseudogene 1.5850 0.0322
9 ENSG00000230251 PHBP4 prohibitin pseudogene 4 1.4875 0.0000
10 ENSG00000264071 RN7SL531P RNA, 7SL, cytoplasmic 531, pseudogene 1.4387 0.0000
63164 ENSG00000183828 NUDT14 nudix hydrolase 14 -1.6274 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63172 ENSG00000283313 U6 spliceosomal RNA -1.6303 0.0000
63171 ENSG00000271899 MIR4466 microRNA 4466 -1.6299 0.0000
63170 ENSG00000229950 TFAP2A-AS1 TFAP2A antisense RNA 1 -1.6292 0.0000
63168 ENSG00000154359 LONRF1 LON peptidase N-terminal domain and ring finger 1 -1.6284 0.0000
63167 ENSG00000207405 SNORA64 small nucleolar RNA, H/ACA box 64 -1.6284 0.0000
63166 ENSG00000175164 ABO ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase -1.6282 0.0000
63165 ENSG00000227896 novel transcript -1.6278 0.0000
63164 ENSG00000183828 NUDT14 nudix hydrolase 14 -1.6274 0.0000
10 ENSG00000264071 RN7SL531P RNA, 7SL, cytoplasmic 531, pseudogene 1.4387 0.0000
9 ENSG00000230251 PHBP4 prohibitin pseudogene 4 1.4875 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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