Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773670

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773670


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M297Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000197990 ZNF734P zinc finger protein 734, pseudogene 2.8074 0.0000
2 ENSG00000232105 RPL32P28 ribosomal protein L32 pseudogene 28 2.8074 0.0000
3 ENSG00000251961 RNU6ATAC13P RNA, U6atac small nuclear 13, pseudogene 2.8074 0.0000
4 ENSG00000280096 TEC 2.8074 0.0000
5 ENSG00000237569 TUBAP1 tubulin alpha pseudogene 1 2.7332 0.0000
6 ENSG00000223572 CKMT1A creatine kinase, mitochondrial 1A 2.7233 0.0000
7 ENSG00000200608 SNORD114-11 small nucleolar RNA, C/D box 114-11 2.6962 0.0000
8 ENSG00000223881 novel transcript 2.5850 0.0002
9 ENSG00000249579 secretory carrier membrane protein 1 (SCAMP1) pseudogene 2.5850 0.0002
10 ENSG00000276316 OR8G7P olfactory receptor family 8 subfamily G member 7 pseudogene 2.5850 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000258735 LINC00637 long intergenic non-protein coding RNA 637 -2.0215 0.0000
63172 ENSG00000259937 novel transcript, sense intronic to SYT10 -2.0206 0.0004
63171 ENSG00000204610 TRIM15 tripartite motif containing 15 -2.0202 0.0000
63170 ENSG00000253878 novel transcript -2.0201 0.0000
63169 ENSG00000124227 ANKRD60 ankyrin repeat domain 60 -2.0200 0.0000
63168 ENSG00000264922 MIR4540 microRNA 4540 -2.0198 0.0000
63167 ENSG00000142634 EFHD2 EF-hand domain family member D2 -2.0197 0.0000
63166 ENSG00000215769 ARHGAP27P1-BPTFP1-KPNA2P3 ARHGAP27P1-BPTFP1-KPNA2P3 readthrough, transcribed pseudogene -2.0194 0.0000
63165 ENSG00000259725 novel transcript -2.0194 0.0000
63164 ENSG00000249637 novel transcript -2.0188 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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