Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773671

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773671


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M298Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000214429 CYCSP6 CYCS pseudogene 6 3.2857 0.0000
2 ENSG00000225354 RPL7AP52 ribosomal protein L7a pseudogene 52 3.1699 0.0000
3 ENSG00000258501 EIF3LP1 eukaryotic translation initiation factor 3 subunit L pseudogene 1 3.1699 0.0000
4 ENSG00000259149 novel transcript 3.1699 0.0000
5 ENSG00000139330 KERA keratocan 3.0000 0.0000
6 ENSG00000201674 Small nucleolar RNA U3 3.0000 0.0000
7 ENSG00000235011 novel transcript 3.0000 0.0000
8 ENSG00000242291 RPL36AP51 ribosomal protein L36a pseudogene 51 3.0000 0.0000
9 ENSG00000250532 novel transcript 3.0000 0.0000
10 ENSG00000250544 LINC02059 long intergenic non-protein coding RNA 2059 2.9886 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000277040 cell cycle exit and neuronal differentiation 1 (CEND1) pseudogene -2.3592 0.0000
63172 ENSG00000273509 CNTNAP3P1 CNTNAP3 pseudogene 1 -2.3592 0.0000
63171 ENSG00000153250 RBMS1 RNA binding motif single stranded interacting protein 1 -2.3591 0.0000
63170 ENSG00000162004 CCDC78 coiled-coil domain containing 78 -2.3591 0.0000
63169 ENSG00000116273 PHF13 PHD finger protein 13 -2.3582 0.0000
63168 ENSG00000227238 TTC39DP tetratricopeptide repeat domain 39D, pseudogene -2.3575 0.0000
63167 ENSG00000271555 novel transcript, sense intronic KANK1 -2.3570 0.0000
63166 ENSG00000224886 novel pseudogene -2.3568 0.0000
63165 ENSG00000205352 PRR13 proline rich 13 -2.3561 0.0000
63164 ENSG00000260563 novel transcript -2.3556 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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