Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773672

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773672


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M299Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000249091 novel transcript 2.8074 0.0000
2 ENSG00000203661 OR2T5 olfactory receptor family 2 subfamily T member 5 2.5850 0.0000
3 ENSG00000226461 OR10G5P olfactory receptor family 10 subfamily G member 5 pseudogene 2.5850 0.0002
4 ENSG00000229255 novel transcript 2.5850 0.0000
5 ENSG00000232293 PAICSP7 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoimidazole succinocarboxamide synthetase pseudogene 7 2.5850 0.0002
6 ENSG00000236085 ACTG1P4 actin gamma 1 pseudogene 4 2.5850 0.0000
7 ENSG00000238386 RNU7-48P RNA, U7 small nuclear 48 pseudogene 2.5850 0.0002
8 ENSG00000240095 novel transcript 2.5850 0.0000
9 ENSG00000250839 mitochondrially encoded cytochrome c oxidase II (MT-CO2) pseudogene 2.5850 0.0002
10 ENSG00000253717 novel transcript 2.4973 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000163932 PRKCD protein kinase C delta -1.9931 0.0000
63172 ENSG00000242178 MTND4P17 MT-ND4 pseudogene 17 -1.9924 0.2253
63171 ENSG00000240084 MTND4LP10 MT-ND4L pseudogene 10 -1.9924 0.2253
63170 ENSG00000226502 KRT8P27 keratin 8 pseudogene 27 -1.9921 0.0004
63169 ENSG00000226648 PLCG1-AS1 PLCG1 antisense RNA 1 -1.9917 0.0000
63168 ENSG00000238280 novel transcript -1.9916 0.0000
63167 ENSG00000276891 RN7SL238P RNA, 7SL, cytoplasmic 238, pseudogene -1.9916 0.0039
63166 ENSG00000277260 FAM74A7 family with sequence similarity 74 member A7 -1.9915 0.0000
63165 ENSG00000215110 UGT2B25P UDP glucuronosyltransferase family 2 member B25, pseudogene -1.9914 0.0092
63164 ENSG00000273964 Y RNA -1.9909 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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