Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773673

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773673


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M300Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000259257 Coiled-coil domain-containing protein 117 (CC117) pseudogene 2.5850 0.0001
2 ENSG00000153714 LURAP1L leucine rich adaptor protein 1 like 2.3219 0.0000
3 ENSG00000214073 RPL21P17 ribosomal protein L21 pseudogene 17 2.3219 0.0000
4 ENSG00000233278 RPS26P2 ribosomal protein S26 pseudogene 2 2.3219 0.0007
5 ENSG00000234567 novel transcript 2.3219 0.0000
6 ENSG00000236086 HMGN2P28 high mobility group nucleosomal binding domain 2 pseudogene 28 2.3219 0.0007
7 ENSG00000249111 novel transcript 2.3219 0.0000
8 ENSG00000257109 OR4F28P olfactory receptor family 4 subfamily F member 28 pseudogene 2.3219 0.0007
9 ENSG00000278085 CT45A8 cancer/testis antigen family 45 member A8 2.3219 0.0007
10 ENSG00000219627 CYCSP17 CYCS pseudogene 17 2.1672 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000275410 HNF1B HNF1 homeobox B -2.0563 0.0000
63172 ENSG00000197747 S100A10 S100 calcium binding protein A10 -2.0563 0.0000
63171 ENSG00000171385 KCND3 potassium voltage-gated channel subfamily D member 3 -2.0553 0.0000
63170 ENSG00000033122 LRRC7 leucine rich repeat containing 7 -2.0552 0.0000
63169 ENSG00000265892 RN7SL311P RNA, 7SL, cytoplasmic 311, pseudogene -2.0551 0.0000
63168 ENSG00000173457 PPP1R14B protein phosphatase 1 regulatory inhibitor subunit 14B -2.0547 0.0000
63167 ENSG00000244295 RPS20P21 ribosomal protein S20 pseudogene 21 -2.0545 0.0000
63166 ENSG00000284450 MIR664B microRNA 664b -2.0540 0.0000
63165 ENSG00000206948 SNORA36A small nucleolar RNA, H/ACA box 36A -2.0540 0.0000
63164 ENSG00000100473 COCH cochlin -2.0539 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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