Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773674

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773674


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M301Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271111 SH3-domain binding protein 4 (SH3BP4) pseudogene 2.3219 0.0004
2 ENSG00000224539 SAGE4P sarcoma antigen 4, pseudogene 2.0000 0.0000
3 ENSG00000225808 DNAJC19P5 DnaJ heat shock protein family (Hsp40) member C19 pseudogene 5 2.0000 0.0000
4 ENSG00000234189 mitochondrially encoded cytochrome b (MT-CYB) pseudogene 2.0000 0.0027
5 ENSG00000234751 ribosomal protein L15 (RPL15) pseudogene 2.0000 0.0027
6 ENSG00000258394 novel transcript, sense overlapping to a novel protein 2.0000 0.0027
7 ENSG00000259324 olfactory receptor pseudogene 2.0000 0.0000
8 ENSG00000239280 pseudogene similar to part of dihydrolipoamide branched chain transacylase E2 DBT 1.9110 0.0000
9 ENSG00000238777 RNU7-141P RNA, U7 small nuclear 141 pseudogene 1.7925 0.0001
10 ENSG00000200635 Y RNA 1.7233 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000181234 TMEM132C transmembrane protein 132C -2.0130 0.0000
63172 ENSG00000124232 RBPJL recombination signal binding protein for immunoglobulin kappa J region like -2.0129 0.0000
63171 ENSG00000241472 PTPRG-AS1 PTPRG antisense RNA 1 -2.0128 0.0000
63170 ENSG00000065978 YBX1 Y-box binding protein 1 -2.0128 0.0000
63169 ENSG00000261115 TMEM178B transmembrane protein 178B -2.0128 0.0000
63168 ENSG00000203684 IBA57-DT IBA57 divergent transcript -2.0127 0.0000
63167 ENSG00000225675 LINC01771 long intergenic non-protein coding RNA 1771 -2.0121 0.0000
63166 ENSG00000134595 SOX3 SRY-box transcription factor 3 -2.0119 0.0000
63165 ENSG00000175093 SPSB4 splA/ryanodine receptor domain and SOCS box containing 4 -2.0119 0.0000
63164 ENSG00000132570 PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 -2.0116 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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