Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773676

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773676


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M303Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000235146 novel transcript 2.5382 0.0000
2 ENSG00000109193 SULT1E1 sulfotransferase family 1E member 1 2.3219 0.0011
3 ENSG00000264564 chromosome 18 open reading frame 26 (C18orf26) pseudogene 2.3219 0.0011
4 ENSG00000280307 novel transcript 2.0763 0.0000
5 ENSG00000232968 EIF4EP4 eukaryotic translation initiation factor 4E pseudogene 4 2.0564 0.0000
6 ENSG00000207170 RNU6-1215P RNA, U6 small nuclear 1215, pseudogene 2.0000 0.0000
8 ENSG00000232031 novel transcript 2.0000 0.0058
9 ENSG00000235421 novel pseudogene similar to part of integrator complex subunit 4 INTS4 2.0000 0.0000
10 ENSG00000243695 TGF beta-inducible nuclear protein 1 (TINP1) pseudogene 2.0000 0.0058
63164 ENSG00000143013 LMO4 LIM domain only 4 -1.9993 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000212518 RNU11-5P RNA, U11 small nuclear 5, pseudogene -2.0000 1.0000
63172 ENSG00000197258 EIF4BP6 eukaryotic translation initiation factor 4B pseudogene 6 -2.0000 1.0000
63171 ENSG00000176928 GCNT4 glucosaminyl (N-acetyl) transferase 4 -2.0000 0.5996
63170 ENSG00000175658 DRD5P2 dopamine receptor D5 pseudogene 2 -2.0000 0.5996
63169 ENSG00000172062 SMN1 survival of motor neuron 1, telomeric -2.0000 1.0000
63168 ENSG00000105971 CAV2 caveolin 2 -1.9997 0.0000
63167 ENSG00000248431 novel transcript -1.9997 0.0000
63166 ENSG00000143994 ABHD1 abhydrolase domain containing 1 -1.9996 0.0000
63165 ENSG00000277383 novel transcript, antisense to GLTSCR1 -1.9995 0.0000
63164 ENSG00000143013 LMO4 LIM domain only 4 -1.9993 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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