Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773677

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773677


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M304Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 3.0000 0.0000
2 ENSG00000232968 EIF4EP4 eukaryotic translation initiation factor 4E pseudogene 4 3.0000 0.0000
3 ENSG00000199508 RNA5SP110 RNA, 5S ribosomal pseudogene 110 2.8074 0.0000
4 ENSG00000267382 glutamate decarboxylase 1-like pseudogene 2.8074 0.0000
5 ENSG00000218521 pseudogene similar to an integrin Alpha-E precursor fragment 2.5850 0.0000
6 ENSG00000244278 novel transcript 2.5850 0.0000
7 ENSG00000257896 La ribonucleoprotein domain family, member 7 (LARP7) 2.5850 0.0000
8 ENSG00000207220 RNU1-57P RNA, U1 small nuclear 57, pseudogene 2.4973 0.0000
9 ENSG00000219951 glyceraldehyde-3-phosphate dehydrogenase (GAPDH) pseudogene 2.3219 0.0002
10 ENSG00000225176 ATP5MGP4 ATP synthase membrane subunit g pseudogene 4 2.3219 0.0002

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000142684 ZNF593 zinc finger protein 593 -2.3191 0.0000
63172 ENSG00000117505 DR1 down-regulator of transcription 1 -2.3190 0.0000
63171 ENSG00000213886 UBD ubiquitin D -2.3183 0.0000
63170 ENSG00000276965 NA -2.3182 0.0000
63169 ENSG00000254827 SLC22A18AS solute carrier family 22 member 18 antisense -2.3178 0.0000
63168 ENSG00000231702 ribosomal protein L39 (RPL39) pseudogene -2.3176 0.0000
63167 ENSG00000257086 novel transcript -2.3174 0.0000
63166 ENSG00000235545 novel transcript -2.3173 0.0000
63165 ENSG00000108262 GIT1 GIT ArfGAP 1 -2.3169 0.0000
63164 ENSG00000111300 NAA25 N-alpha-acetyltransferase 25, NatB auxiliary subunit -2.3167 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...