Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773678

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773678


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M305Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000265859 MIR5704 microRNA 5704 3.0971 0.0000
2 ENSG00000188831 DPPA3P2 developmental pluripotency associated 3 pseudogene 2 2.8074 0.0000
3 ENSG00000213287 translocase of outer mitochondrial membrane 22 homolog (yeast) (TOMM22) pseudogene 2.8074 0.0000
4 ENSG00000261665 TUBAP4 tubulin alpha pseudogene 4 2.8074 0.0000
5 ENSG00000276137 MIR6133 microRNA 6133 2.8074 0.0000
6 ENSG00000279116 OR8D2 olfactory receptor family 8 subfamily D member 2 2.8074 0.0000
7 ENSG00000215586 FUS interacting protein (serine/arginine-rich) 1 (FUSIP1) pseudogene 2.6462 0.0000
8 ENSG00000163012 ZSWIM2 zinc finger SWIM-type containing 2 2.5850 0.0001
9 ENSG00000222343 RN7SKP139 RN7SK pseudogene 139 2.5850 0.0001
10 ENSG00000223822 EEF1A1P1 eukaryotic translation elongation factor 1 alpha 1 pseudogene 1 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000112175 BMP5 bone morphogenetic protein 5 -2.1567 0.0166
63172 ENSG00000256463 SALL3 spalt like transcription factor 3 -2.1566 0.0000
63171 ENSG00000280095 novel transcript -2.1563 0.0000
63170 ENSG00000258630 LINC02292 long intergenic non-protein coding RNA 2292 -2.1561 0.0000
63169 ENSG00000274227 novel transcript, antisense to ERP29 -2.1555 0.0000
63168 ENSG00000202309 Y RNA -2.1551 0.0000
63167 ENSG00000095752 IL11 interleukin 11 -2.1551 0.0000
63166 ENSG00000224846 NQO2-AS1 NQO2 antisense RNA 1 -2.1549 0.0000
63165 ENSG00000204381 LAYN layilin -2.1548 0.0000
63164 ENSG00000138166 DUSP5 dual specificity phosphatase 5 -2.1548 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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