Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773679

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773679


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M306Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000226307 HNRNPDLP1 HNRNPDL pseudogene 1 2.0000 0.0023
2 ENSG00000235105 amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 2 (ALS2CR2) pseudogene 1.8386 0.0000
3 ENSG00000274570 SPDYE10P speedy/RINGO cell cycle regulator family member E10, pseudogene 1.6356 0.0000
4 ENSG00000222225 RNU6-447P RNA, U6 small nuclear 447, pseudogene 1.5850 0.0000
5 ENSG00000223941 LINC01014 long intergenic non-protein coding RNA 1014 1.5850 0.0000
6 ENSG00000225263 PCDH9-AS3 PCDH9 antisense RNA 3 1.5850 0.0173
7 ENSG00000230768 LINC01676 long intergenic non-protein coding RNA 1676 1.5850 0.0173
8 ENSG00000271157 adenosine deaminase, RNA-specific, B1 (ADARB1) pseudogene 1.5850 0.0173
9 ENSG00000275163 potassium large conductance calcium-activated channel, subfamily M, beta member 2 (KCNMB2-IT1 - KCNMB2 readthrough transcript) 1.5850 0.0000
10 ENSG00000253001 RN7SKP105 RN7SK pseudogene 105 1.5000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000275060 PPP1R26P3 protein phosphatase 1 regulatory subunit 26 pseudogene 3 -1.6340 0.0009
63172 ENSG00000162913 OBSCN-AS1 OBSCN antisense RNA 1 -1.6337 0.0000
63171 ENSG00000180233 ZNRF2 zinc and ring finger 2 -1.6336 0.0000
63170 ENSG00000271732 novel transcript -1.6335 0.0000
63169 ENSG00000269139 novel transcript, antisense to CTXN1 and TIMM44 -1.6333 0.0000
63168 ENSG00000268199 novel transcript, antisense to ELL -1.6329 0.0000
63167 ENSG00000281974 TEC -1.6328 0.0000
63166 ENSG00000155254 MARVELD1 MARVEL domain containing 1 -1.6328 0.0000
63165 ENSG00000206785 SNORA15B-2 small nucleolar RNA, H/ACA box 15B-2 -1.6327 0.0000
63164 ENSG00000254461 novel transcript -1.6326 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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