Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773680

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773680


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M307Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000238529 RNU6-599P RNA, U6 small nuclear 599, pseudogene 2.0000 0.0030
2 ENSG00000235221 LINC00383 long intergenic non-protein coding RNA 383 1.5850 0.0208
3 ENSG00000251175 GSTCD-AS1 GSTCD antisense RNA 1 1.4462 0.0000
4 ENSG00000224698 novel transcript 1.4387 0.0000
5 ENSG00000217067 ribosomal protein S17 (RPS17) pseudogene 1.4308 0.0000
6 ENSG00000212211 Small nucleolar RNA U3 1.4036 0.0000
7 ENSG00000271793 novel protein, SYNCRIP-SNX14 readthrough 1.3585 0.0000
8 ENSG00000248979 LAMTOR3P2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 pseudogene 2 1.3504 0.0000
9 ENSG00000242318 ribosomal protein L21 (RPL21) pseudogene 1.2925 0.0030
10 ENSG00000255418 LINC02718 long intergenic non-protein coding RNA 2718 1.2925 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000132635 PCED1A PC-esterase domain containing 1A -1.7978 0.0000
63172 ENSG00000276436 novel transcript, antisense to KPNA3 -1.7975 0.0000
63171 ENSG00000274164 RNA5SP439 RNA, 5S ribosomal pseudogene 439 -1.7973 0.0000
63170 ENSG00000251692 PTX4 pentraxin 4 -1.7971 0.0000
63169 ENSG00000167815 PRDX2 peroxiredoxin 2 -1.7970 0.0000
63168 ENSG00000119714 GPR68 G protein-coupled receptor 68 -1.7970 0.0000
63167 ENSG00000100300 TSPO translocator protein -1.7970 0.0000
63166 ENSG00000109089 CDR2L cerebellar degeneration related protein 2 like -1.7968 0.0000
63165 ENSG00000102981 PARD6A par-6 family cell polarity regulator alpha -1.7968 0.0000
63164 ENSG00000233751 RRAS2P2 RRAS2 pseudogene 2 -1.7967 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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