Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773681

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773681


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M308Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000130538 OR11H1 olfactory receptor family 11 subfamily H member 1 3.4594 0.0000
2 ENSG00000231388 FMN2P1 FMN2 pseudogene 1 3.4594 0.0000
3 ENSG00000242121 RN7SL267P RNA, 7SL, cytoplasmic 267, pseudogene 3.4594 0.0000
4 ENSG00000249065 PCNAP1 proliferating cell nuclear antigen pseudogene 1 3.3219 0.0000
5 ENSG00000174325 DIRC1 disrupted in renal carcinoma 1 3.1699 0.0000
6 ENSG00000258506 ribosomal protein L13a (RPL13A) pseudogene 3.1699 0.0000
7 ENSG00000264705 novel transcript 3.1699 0.0000
8 ENSG00000260975 novel transcript 3.1144 0.0000
9 ENSG00000232458 LINC01450 long intergenic non-protein coding RNA 1450 3.0000 0.0000
10 ENSG00000272316 novel transcript 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000132671 SSTR4 somatostatin receptor 4 -2.4542 0.0000
63172 ENSG00000198576 ARC activity regulated cytoskeleton associated protein -2.4537 0.0000
63170 ENSG00000277260 FAM74A7 family with sequence similarity 74 member A7 -2.4534 0.0094
63169 ENSG00000251125 novel transcript -2.4534 0.3746
63168 ENSG00000248886 UGT2A3P7 UDP glucuronosyltransferase family 2 member A3 pseudogene 7 -2.4534 0.0231
63167 ENSG00000248288 ribosomal protein L5 (RPL5) pseudogene -2.4534 0.3746
63166 ENSG00000228167 translocase of inner mitochondrial membrane 17 homolog A (yeast) (TIMM17A) pseudogene -2.4534 0.3746
63165 ENSG00000207334 RNU6-12P RNA, U6 small nuclear 12, pseudogene -2.4534 0.3746
63164 ENSG00000123165 ACTRT1 actin related protein T1 -2.4534 0.3746
10 ENSG00000272316 novel transcript 3.0000 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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