Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773682

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773682


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M309Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000250927 MESTP3 mesoderm specific transcript pseudogene 3 2.5850 0.0001
2 ENSG00000270516 cereblon, pseudogene 2.5850 0.0000
3 ENSG00000204361 NXPE2 neurexophilin and PC-esterase domain family member 2 2.3219 0.0004
4 ENSG00000224695 MTND6P7 MT-ND6 pseudogene 7 2.3219 0.0000
5 ENSG00000227789 MTCYBP7 MT-CYB pseudogene 7 2.3219 0.0000
6 ENSG00000249226 SUCLG2P4 SUCLG2 pseudogene 4 2.3219 0.0004
7 ENSG00000252479 RNA5SP309 RNA, 5S ribosomal pseudogene 309 2.3219 0.0000
8 ENSG00000241804 small nuclear ribonucleoprotein polypeptide B'' (SNRPB2) pseudogene 2.1962 0.0000
9 ENSG00000228568 RPS15AP13 ribosomal protein S15a pseudogene 13 2.1073 0.0000
10 ENSG00000199051 MIR361 microRNA 361 2.0000 0.0029

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000136110 CNMD chondromodulin -1.9596 0.0000
63172 ENSG00000064300 NGFR nerve growth factor receptor -1.9595 0.0000
63171 ENSG00000223612 EGFR-coamplified and overexpressed protein (ECOP) pseudogene -1.9592 0.0000
63170 ENSG00000279036 TEC -1.9583 0.0000
63169 ENSG00000143469 SYT14 synaptotagmin 14 -1.9582 0.0000
63168 ENSG00000231983 LINC00415 long intergenic non-protein coding RNA 415 -1.9579 0.0000
63167 ENSG00000234548 LINC02020 long intergenic non-protein coding RNA 2020 -1.9578 0.0000
63166 ENSG00000277357 NPAP1P7 nuclear pore associated protein 1 pseudogene 7 -1.9573 0.0000
63165 ENSG00000123131 PRDX4 peroxiredoxin 4 -1.9571 0.0000
63164 ENSG00000169184 MN1 MN1 proto-oncogene, transcriptional regulator -1.9570 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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