Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773683

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773683


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M310Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000199878 RN7SKP149 RN7SK pseudogene 149 3.2297 0.0000
2 ENSG00000109163 GNRHR gonadotropin releasing hormone receptor 3.1699 0.0000
3 ENSG00000222713 RN7SKP51 RN7SK pseudogene 51 3.1699 0.0000
4 ENSG00000257545 novel transcript, antisense to POLR3B, RFX4 and RIC8B. 3.0373 0.0000
5 ENSG00000224799 novel transcript 3.0000 0.0000
6 ENSG00000248745 NMNAT1P4 NMNAT1 pseudogene 4 3.0000 0.0000
7 ENSG00000251172 pseudogene similar to part of transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 (TPTE2) 3.0000 0.0000
8 ENSG00000272354 novel transcript 3.0000 0.0000
9 ENSG00000272370 novel transcript 3.0000 0.0000
10 ENSG00000276578 sulfotransferase family, cytosolic, 2A, dehydroepiandrosterone (DHEA)-preferring, member 1 (SULT2A1) pseudogene 3.0000 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000201604 RNU6-740P RNA, U6 small nuclear 740, pseudogene -2.3194 0.0037
63172 ENSG00000244740 ribosomal protein L31 (RPL31) pseudogene -2.3188 0.0000
63171 ENSG00000207923 MIR559 microRNA 559 -2.3184 0.0000
63170 ENSG00000235174 RPL39P3 ribosomal protein L39 pseudogene 3 -2.3181 0.0000
63169 ENSG00000157833 GAREM2 GRB2 associated regulator of MAPK1 subtype 2 -2.3181 0.0000
63168 ENSG00000229599 LINC00411 long intergenic non-protein coding RNA 411 -2.3177 0.0056
63167 ENSG00000137634 NXPE4 neurexophilin and PC-esterase domain family member 4 -2.3177 0.0023
63166 ENSG00000203883 SOX18 SRY-box transcription factor 18 -2.3167 0.0000
63165 ENSG00000271638 BNIP3P19 BCL2 interacting protein 3 pseudogene 19 -2.3154 0.0004
63164 ENSG00000243995 WAP four-disulfide core domain 15A (Wfdc15a) pseudogene -2.3153 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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