Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773685

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773685


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M312Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000271712 family with sequence similarity 71, member B (FAM71B) pseudogene 2.8074 0.0000
2 ENSG00000244321 LINC01326 long intergenic non-protein coding RNA 1326 2.3219 0.0000
3 ENSG00000280082 TEC 2.3219 0.0000
4 ENSG00000109272 PF4V1 platelet factor 4 variant 1 2.0000 0.0040
5 ENSG00000181009 OR52N5 olfactory receptor family 52 subfamily N member 5 2.0000 0.0000
6 ENSG00000201933 Y RNA 2.0000 0.0000
7 ENSG00000255029 novel transcript 2.0000 0.0000
8 ENSG00000203926 SPANXA2 SPANX family member A2 1.9170 0.0000
9 ENSG00000242111 TOPORSLP topoisomerase I binding, arginine and serine rich like, pseudogene 1.8814 0.0000
10 ENSG00000224498 MAPKAPK5P1 MAPKAPK5 pseudogene 1 1.8617 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000184486 POU3F2 POU class 3 homeobox 2 -1.8656 0.0000
63172 ENSG00000126790 L3HYPDH trans-L-3-hydroxyproline dehydratase -1.8654 0.0000
63171 ENSG00000279160 TEC -1.8648 0.0000
63170 ENSG00000221369 MIR548G microRNA 548g -1.8646 0.0003
63169 ENSG00000233728 novel transcript -1.8641 0.0000
63168 ENSG00000204381 LAYN layilin -1.8640 0.0000
63167 ENSG00000213402 PTPRCAP protein tyrosine phosphatase receptor type C associated protein -1.8637 0.0000
63166 ENSG00000198576 ARC activity regulated cytoskeleton associated protein -1.8630 0.0000
63165 ENSG00000259706 HSP90B2P heat shock protein 90 beta family member 2, pseudogene -1.8627 0.0000
63164 ENSG00000267228 novel transcript -1.8625 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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