Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773686

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773686


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M313Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000284482 MIR4680 microRNA 4680 2.5850 0.0001
2 ENSG00000177803 YWHAQP4 YWHAQ pseudogene 4 2.3219 0.0006
3 ENSG00000221849 zinc finger protein 547 (ZNF547) pseudogene 2.3219 0.0000
4 ENSG00000265322 MIR3118-2 microRNA 3118-2 2.3219 0.0000
5 ENSG00000278980 novel transcript 2.3219 0.0006
6 ENSG00000254794 mitochondrially encoded cytochrome b (MT-CYB) pseudogene 2.1887 0.0000
7 ENSG00000250037 FAST kinase domains 3 (FASTKD3) pseudogene 2.0221 0.0000
8 ENSG00000199246 RNU6-896P RNA, U6 small nuclear 896, pseudogene 2.0000 0.0039
9 ENSG00000202379 Small nucleolar RNA SNORA70 2.0000 0.0000
10 ENSG00000207815 MIR563 microRNA 563 2.0000 0.0039

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000217767 NDUFAB1P1 NADH:ubiquinone oxidoreductase subunit AB1 pseudogene 1 -2.0000 1.0000
63172 ENSG00000217241 CBX3P9 chromobox 3 pseudogene 9 -2.0000 1.0000
63171 ENSG00000216740 ANXA2P3 annexin A2 pseudogene 3 -2.0000 1.0000
63170 ENSG00000216191 MIR8485 microRNA 8485 -2.0000 1.0000
63169 ENSG00000212598 Small nucleolar RNA U3 -2.0000 1.0000
63168 ENSG00000207518 RNU6-59P RNA, U6 small nuclear 59, pseudogene -2.0000 1.0000
63167 ENSG00000207092 Y RNA -2.0000 1.0000
63166 ENSG00000206782 RNU6-224P RNA, U6 small nuclear 224, pseudogene -2.0000 1.0000
63165 ENSG00000200883 Y RNA -2.0000 1.0000
63164 ENSG00000199390 SNORD114-7 small nucleolar RNA, C/D box 114-7 -2.0000 0.5989

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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