Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773687

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773687


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M314Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241792 novel transcript 3.1699 0.0000
2 ENSG00000251137 RPL7L1P7 ribosomal protein L7 like 1 pseudogene 7 3.0000 0.0000
3 ENSG00000263637 novel transcript, antisense to CCDC102B 3.0000 0.0000
4 ENSG00000265641 MIR3929 microRNA 3929 2.9037 0.0000
5 ENSG00000231620 novel transcript 2.8219 0.0000
6 ENSG00000271290 COPS8P1 COP9 signalosome subunit 8 pseudogene 1 2.8074 0.0000
7 ENSG00000166396 SERPINB7 serpin family B member 7 2.5850 0.0000
8 ENSG00000199571 NA 2.5850 0.0000
9 ENSG00000201665 RN7SKP6 RN7SK pseudogene 6 2.5850 0.0000
10 ENSG00000226616 OR52M2P olfactory receptor family 52 subfamily M member 2 pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000169738 DCXR dicarbonyl and L-xylulose reductase -2.0453 0.0000
63172 ENSG00000264448 MIR378D2HG MIR378D2 host gene -2.0446 0.0000
63171 ENSG00000260029 novel transcript, antisense to NKD1 -2.0444 0.0000
63170 ENSG00000268120 novel transcript -2.0439 0.0000
63169 ENSG00000083067 TRPM3 transient receptor potential cation channel subfamily M member 3 -2.0438 0.0000
63168 ENSG00000268030 novel transcript, antisense to KXD1 -2.0438 0.0000
63167 ENSG00000207258 Y RNA -2.0437 0.0000
63166 ENSG00000118276 B4GALT6 beta-1,4-galactosyltransferase 6 -2.0430 0.0000
63165 ENSG00000247675 LRP4-AS1 LRP4 antisense RNA 1 -2.0428 0.0000
63164 ENSG00000105185 PDCD5 programmed cell death 5 -2.0427 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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