Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773688

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773688


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M315Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251614 HSPA8P19 heat shock protein family A (Hsp70) member pseudogene 19 2.8074 0.0000
2 ENSG00000226393 IFNA20P interferon alpha 20, pseudogene 2.6610 0.0000
3 ENSG00000138379 MSTN myostatin 2.5850 0.0000
4 ENSG00000200146 RNU6-544P RNA, U6 small nuclear 544, pseudogene 2.5850 0.0000
5 ENSG00000200902 RNU6-627P RNA, U6 small nuclear 627, pseudogene 2.5850 0.0000
6 ENSG00000229119 60S acidic ribosomal protein (RPLP0) pseudogene 2.5850 0.0000
7 ENSG00000231675 nuclear receptor coactivator 6 (NCOA6) pseudogene 2.5850 0.0000
8 ENSG00000240393 developmentally regulated GTP binding protein 1 (DRG1) pseudogene 2.5850 0.0000
9 ENSG00000251218 novel transcript 2.5850 0.0000
10 ENSG00000253571 transcriptional adaptor 1 (TADA1) pseudogene 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000275457 novel transcript, antisense to XRN2 -2.0110 0.6163
63172 ENSG00000088930 XRN2 5'-3' exoribonuclease 2 -2.0110 0.6163
63171 ENSG00000254225 BTF3P1 BTF3 pseudogene 1 -2.0107 0.0055
63170 ENSG00000203883 SOX18 SRY-box transcription factor 18 -2.0106 0.0000
63169 ENSG00000226328 NUP50-DT NUP50 divergent transcript -2.0101 0.0000
63168 ENSG00000201331 SNORD115-23 small nucleolar RNA, C/D box 115-23 -2.0100 0.0000
63167 ENSG00000162639 HENMT1 HEN methyltransferase 1 -2.0096 0.0000
63166 ENSG00000240364 RPL31P59 ribosomal protein L31 pseudogene 59 -2.0090 0.0207
63165 ENSG00000126821 SGPP1 sphingosine-1-phosphate phosphatase 1 -2.0089 0.0000
63164 ENSG00000276293 PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta -2.0086 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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