Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773689

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773689


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M316Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000230945 LINC01507 long intergenic non-protein coding RNA 1507 2.3219 0.0003
2 ENSG00000232812 LINC01717 long intergenic non-protein coding RNA 1717 2.3219 0.0003
3 ENSG00000240376 ribosomal protein S8 (RPS8) pseudogene 2.3219 0.0003
4 ENSG00000224296 MRPL49P1 mitochondrial ribosomal protein L49 pseudogene 1 2.2049 0.0000
5 ENSG00000253676 TAGLN2P1 transgelin 2 pseudogene 1 2.1923 0.0000
6 ENSG00000230584 CCT5P2 chaperonin containing TCP1 subunit 5 pseudogene 2 2.0000 0.0020
7 ENSG00000231589 novel transcript 2.0000 0.0000
8 ENSG00000236433 RPL37P21 ribosomal protein L37 pseudogene 21 2.0000 0.0020
10 ENSG00000253657 DnaJ (Hsp40) homolog, subfamily B, member 6 (DNAJB6) pseudogene 2.0000 0.0020
63164 ENSG00000228544 CCDC183-AS1 CCDC183 antisense RNA 1 -1.9549 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000213563 C8orf82 chromosome 8 open reading frame 82 -1.9569 0.0000
63172 ENSG00000212333 RNA5SP213 RNA, 5S ribosomal pseudogene 213 -1.9566 0.0422
63171 ENSG00000115289 PCGF1 polycomb group ring finger 1 -1.9565 0.0000
63170 ENSG00000265258 MIR4686 microRNA 4686 -1.9563 0.0000
63169 ENSG00000177606 JUN Jun proto-oncogene, AP-1 transcription factor subunit -1.9562 0.0000
63168 ENSG00000092051 JPH4 junctophilin 4 -1.9561 0.0000
63167 ENSG00000204060 FOXO6 forkhead box O6 -1.9560 0.0000
63166 ENSG00000178093 TSSK6 testis specific serine kinase 6 -1.9558 0.0000
63165 ENSG00000123975 CKS2 CDC28 protein kinase regulatory subunit 2 -1.9549 0.0000
63164 ENSG00000228544 CCDC183-AS1 CCDC183 antisense RNA 1 -1.9549 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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