Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773690

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773690


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M317Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000265735 RN7SL5P RNA, 7SL, cytoplasmic 5, pseudogene 2.3219 0.0000
2 ENSG00000200814 RNU6-595P RNA, U6 small nuclear 595, pseudogene 1.6443 0.0000
3 ENSG00000212620 Small nucleolar RNA SNORA75 1.5850 0.0000
4 ENSG00000229208 RBMY2NP RNA binding motif protein Y-linked family 2 member N, pseudogene 1.5850 0.0234
5 ENSG00000230968 novel transcript 1.5850 0.0005
6 ENSG00000259113 novel transcript 1.5850 0.0234
7 ENSG00000283476 MIR1279 microRNA 1279 1.5850 0.0234
8 ENSG00000271679 LSM1P2 LSM1 homolog, mRNA degradation associated pseudogene 2 1.4680 0.0000
9 ENSG00000176695 OR4F17 olfactory receptor family 4 subfamily F member 17 1.4387 0.0000
10 ENSG00000248363 novel transcript 1.3900 0.0001

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000156521 TYSND1 trypsin domain containing 1 -1.8057 0.0000
63171 ENSG00000205794 acyl-CoA thioesterase 7 (ACOT7) pseudogene -1.8053 0.0000
63170 ENSG00000148803 FUOM fucose mutarotase -1.8049 0.0000
63169 ENSG00000283928 MIR637 microRNA 637 -1.8048 0.0000
63168 ENSG00000270195 novel transcript -1.8046 0.0000
63167 ENSG00000162069 BICDL2 BICD family like cargo adaptor 2 -1.8045 0.0000
63166 ENSG00000170745 KCNS3 potassium voltage-gated channel modifier subfamily S member 3 -1.8039 0.0000
63165 ENSG00000283663 novel transcript -1.8038 0.0000
63164 ENSG00000166917 MIR202HG MIR202 host gene -1.8037 0.0000
10 ENSG00000248363 novel transcript 1.3900 0.0001

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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