Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773691

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773691


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M318Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000201311 Y RNA 2.3219 0.0004
2 ENSG00000201452 RNU6-1317P RNA, U6 small nuclear 1317, pseudogene 2.3219 0.0004
3 ENSG00000224750 novel transcript 2.3219 0.0000
4 ENSG00000226837 HMGB1P32 high mobility group box 1 pseudogene 32 2.3219 0.0000
6 ENSG00000236285 NPM1P8 nucleophosmin 1 pseudogene 8 2.3219 0.0004
7 ENSG00000236468 eukaryotic translation elongation factor 1 alpha 1 (EEF1A1) pseudogene 2.3219 0.0000
8 ENSG00000237303 HIGD1AP8 HIG1 hypoxia inducible domain family member 1A pseudogene 8 2.3219 0.0004
9 ENSG00000242573 ACTR3P3 ACTR3 pseudogene 3 2.3219 0.0000
10 ENSG00000251427 UDP glucuronosyltransferase 2 family pseudogene 2.3219 0.0004
63164 ENSG00000266405 CBX3P2 chromobox 3 pseudogene 2 -1.8325 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000103253 HAGHL hydroxyacylglutathione hydrolase like -1.8338 0.0000
63172 ENSG00000231856 novel transcript -1.8337 0.0000
63171 ENSG00000260900 integrator complex subunit 4-like 2 (INTS4L2) pseudogene -1.8334 0.0000
63170 ENSG00000254686 novel transcript -1.8333 0.1517
63169 ENSG00000244337 novel transcript -1.8333 0.1517
63168 ENSG00000233236 LINC02573 long intergenic non-protein coding RNA 2573 -1.8333 0.1517
63167 ENSG00000257506 phospholipase A2, group X (PLA2G10) pseudogene -1.8333 0.0013
63166 ENSG00000283695 novel zinc finger protein pseudogene -1.8330 0.0000
63165 ENSG00000101222 SPEF1 sperm flagellar 1 -1.8325 0.0000
63164 ENSG00000266405 CBX3P2 chromobox 3 pseudogene 2 -1.8325 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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