Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773692

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773692


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M319Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000241022 NIPA2P2 NIPA2 pseudogene 2 2.8813 0.0000
2 ENSG00000201228 Y RNA 2.3219 0.0006
3 ENSG00000207275 RNU6-441P RNA, U6 small nuclear 441, pseudogene 2.3219 0.0000
4 ENSG00000224299 MTATP6P16 MT-ATP6 pseudogene 16 2.3219 0.0006
5 ENSG00000258934 YWHAQP1 YWHAQ pseudogene 1 2.3219 0.0006
6 ENSG00000230593 PPIAP40 peptidylprolyl isomerase A pseudogene 40 2.2299 0.0000
7 ENSG00000255217 OR5J7P olfactory receptor family 5 subfamily J member 7 pseudogene 2.2049 0.0000
8 ENSG00000256389 novel transcript 2.1510 0.0000
9 ENSG00000256994 LINC02378 long intergenic non-protein coding RNA 2378 2.1510 0.0000
10 ENSG00000181631 P2RY13 purinergic receptor P2Y13 2.0000 0.0036

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000183674 LINC00518 long intergenic non-protein coding RNA 518 -1.7322 0.0000
63171 ENSG00000163714 U2SURP U2 snRNP associated SURP domain containing -1.7316 0.0000
63170 ENSG00000165879 FRAT1 FRAT regulator of WNT signaling pathway 1 -1.7313 0.0000
63169 ENSG00000267458 novel transcript, antisense to CALR -1.7313 0.0000
63168 ENSG00000142279 WTIP WT1 interacting protein -1.7312 0.0000
63167 ENSG00000279607 novel transcript -1.7312 0.0000
63166 ENSG00000170935 NCBP2L nuclear cap binding protein subunit 2 like -1.7310 0.0000
63165 ENSG00000244142 ATP6V0CP2 ATPase H+ transporting V0 subunit c pseudogene 2 -1.7306 0.0248
63164 ENSG00000239697 TNFSF12 TNF superfamily member 12 -1.7304 0.0000
10 ENSG00000181631 P2RY13 purinergic receptor P2Y13 2.0000 0.0036

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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