Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773693

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773693


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M320Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000183122 OR2A3P olfactory receptor family 2 subfamily A member 3 pseudogene 3.3219 0.0000
2 ENSG00000212829 RPS26P3 ribosomal protein S26 pseudogene 3 3.3219 0.0000
3 ENSG00000278950 novel transcript 2.7804 0.0000
4 ENSG00000243035 RN7SL810P RNA, 7SL, cytoplasmic 810, pseudogene 2.6049 0.0000
5 ENSG00000280338 tec 2.5978 0.0000
6 ENSG00000206871 RNU6-533P RNA, U6 small nuclear 533, pseudogene 2.5850 0.0001
7 ENSG00000213439 OR5AC1 olfactory receptor family 5 subfamily AC member 1 (gene/pseudogene) 2.5850 0.0001
8 ENSG00000253610 methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like (MTHFD1L) pseudogene 2.5850 0.0001
9 ENSG00000201574 RNU1-93P RNA, U1 small nuclear 93, pseudogene 2.4189 0.0000
10 ENSG00000242689 CNTF ciliary neurotrophic factor 2.3481 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000253409 TRBV7-4 T cell receptor beta variable 7-4 -2.2332 0.0000
63172 ENSG00000259711 novel transcript -2.2328 0.0000
63171 ENSG00000235303 novel transcript -2.2327 0.0045
63170 ENSG00000095596 CYP26A1 cytochrome P450 family 26 subfamily A member 1 -2.2323 0.0000
63169 ENSG00000125445 MRPS7 mitochondrial ribosomal protein S7 -2.2322 0.0000
63168 ENSG00000229689 Ankyrin repeat domain-containing protein pseudogene -2.2320 0.0000
63167 ENSG00000251009 novel transcript -2.2318 0.0000
63166 ENSG00000172239 PAIP1 poly(A) binding protein interacting protein 1 -2.2317 0.0000
63165 ENSG00000239367 RN7SL477P RNA, 7SL, cytoplasmic 477, pseudogene -2.2317 0.0000
63164 ENSG00000110888 CAPRIN2 caprin family member 2 -2.2315 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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