Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773694

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773694


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M321Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000205328 OR6C65 olfactory receptor family 6 subfamily C member 65 3.1699 0.0000
2 ENSG00000257414 OR6C73P olfactory receptor family 6 subfamily C member 73 pseudogene 3.1699 0.0000
3 ENSG00000228959 novel transcript 3.0000 0.0000
4 ENSG00000208308 SNORA40B small nucleolar RNA, H/ACA box 40B 2.9358 0.0000
5 ENSG00000202125 RNU1-100P RNA, U1 small nuclear 100, pseudogene 2.5850 0.0000
6 ENSG00000223601 EBLN1 endogenous Bornavirus like nucleoprotein 1 2.5850 0.0000
7 ENSG00000238149 ribosomal protein S15a (RPS15A) pseudogene 2.5850 0.0000
8 ENSG00000241328 LINC02070 long intergenic non-protein coding RNA 2070 2.5850 0.0000
9 ENSG00000248363 novel transcript 2.5850 0.0000
10 ENSG00000250842 novel transcript 2.5850 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000266405 CBX3P2 chromobox 3 pseudogene 2 -2.1330 0.0000
63172 ENSG00000202309 Y RNA -2.1330 0.0000
63171 ENSG00000171729 TMEM51 transmembrane protein 51 -2.1330 0.0000
63170 ENSG00000138135 CH25H cholesterol 25-hydroxylase -2.1319 0.0004
63169 ENSG00000263788 wingless-type MMTV integration site family, member 9B (WNT9B) pseudogene -2.1312 0.0000
63168 ENSG00000228594 FNDC10 fibronectin type III domain containing 10 -2.1311 0.0000
63167 ENSG00000178035 IMPDH2 inosine monophosphate dehydrogenase 2 -2.1310 0.0000
63166 ENSG00000271749 mitochondrially encoded cytochrome c oxidase III (MT-CO3) pseudogene -2.1295 0.0195
63165 ENSG00000254102 novel transcript -2.1291 0.0000
63164 ENSG00000279314 TEC -2.1291 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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