Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773695

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773695


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M322Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000263581 MIR548X2 microRNA 548x-2 3.2079 0.0000
2 ENSG00000198829 SUCNR1 succinate receptor 1 2.8074 0.0000
3 ENSG00000202379 Small nucleolar RNA SNORA70 2.5850 0.0001
4 ENSG00000225289 RPL29P29 ribosomal protein L29 pseudogene 29 2.5850 0.0000
5 ENSG00000232735 ATG4AP1 autophagy related 4A cysteine peptidase pseudogene 1 2.5850 0.0001
6 ENSG00000235352 SGCEP1 SGCE pseudogene 1 2.5850 0.0001
7 ENSG00000258567 DUX4L16 double homeobox 4 like 16 (pseudogene) 2.5850 0.0001
8 ENSG00000259154 DUX4L17 double homeobox 4 like 17 (pseudogene) 2.5850 0.0001
9 ENSG00000276763 ribosomal protein L10 (RPL10) pseudogene 2.5850 0.0001
10 ENSG00000221187 MIR548M microRNA 548m 2.3219 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000160781 PAQR6 progestin and adipoQ receptor family member 6 -2.0083 0.0000
63172 ENSG00000229782 novel transcript -2.0082 0.0000
63171 ENSG00000279265 TEC -2.0080 0.0000
63170 ENSG00000224138 novel transcript -2.0080 0.0000
63169 ENSG00000253563 NKX2-1-AS1 NKX2-1 antisense RNA 1 -2.0079 0.0000
63168 ENSG00000067082 KLF6 Kruppel like factor 6 -2.0075 0.0000
63167 ENSG00000103024 NME3 NME/NM23 nucleoside diphosphate kinase 3 -2.0069 0.0000
63166 ENSG00000115266 APC2 APC regulator of WNT signaling pathway 2 -2.0064 0.0000
63165 ENSG00000258674 novel protein -2.0063 0.0000
63164 ENSG00000136715 SAP130 Sin3A associated protein 130 -2.0053 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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