Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773696

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773696


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M323Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000251308 MRPS33P3 mitochondrial ribosomal protein S33 pseudogene 3 2.3219 0.0005
2 ENSG00000263424 novel transcript, antisense to DSEL 2.3219 0.0000
3 ENSG00000225935 BANF1P5 BANF1 pseudogene 5 2.0000 0.0036
4 ENSG00000230724 LINC01001 long intergenic non-protein coding RNA 1001 2.0000 0.0036
5 ENSG00000234835 PHBP13 prohibitin pseudogene 13 2.0000 0.0000
6 ENSG00000239227 pseudogene similar to part of S-phase kinase-associated protein 2 (p45) SKP2 2.0000 0.0000
7 ENSG00000248984 novel transcript 2.0000 0.0036
8 ENSG00000249052 novel transcript 2.0000 0.0036
9 ENSG00000252116 RNU4ATAC4P RNA, U4atac small nuclear 4, pseudogene 2.0000 0.0036
63164 ENSG00000237741 novel transcript -1.7562 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000235852 novel transcript -1.7574 0.0000
63172 ENSG00000235992 GRAMD4P2 GRAM domain containing 4 pseudogene 2 -1.7572 0.0000
63171 ENSG00000081842 PCDHA6 protocadherin alpha 6 -1.7571 0.0000
63170 ENSG00000177943 MAMDC4 MAM domain containing 4 -1.7570 0.0000
63169 ENSG00000176593 novel transcript, antisense to ZNF606 -1.7569 0.0000
63168 ENSG00000266963 novel transcript, antisense to CATSPERG -1.7569 0.0000
63167 ENSG00000237457 LINC01351 long intergenic non-protein coding RNA 1351 -1.7566 0.0000
63166 ENSG00000136371 MTHFS methenyltetrahydrofolate synthetase -1.7565 0.0000
63165 ENSG00000141504 SAT2 spermidine/spermine N1-acetyltransferase family member 2 -1.7563 0.0000
63164 ENSG00000237741 novel transcript -1.7562 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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