Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773697

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773697


Profile download
7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M324Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000283371 IQ motif containing K (IQCK) pseudogene 1.5850 0.0202
2 ENSG00000214405 RAP1BP2 RAP1B, member of RAS oncogene family pseudogene 2 1.4680 0.0000
3 ENSG00000232239 RBPJP5 RBPJ pseudogene 5 1.2925 0.0000
4 ENSG00000236284 VN1R31P vomeronasal 1 receptor 31 pseudogene 1.1950 0.0004
5 ENSG00000278981 novel transcript, antisense to DCHS2 1.1489 0.0000
6 ENSG00000273550 novel transcript 1.1462 0.0001
7 ENSG00000241104 CEACAMP10 CEA cell adhesion molecule pseudogene 10 1.1218 0.0000
9 ENSG00000245711 NADK2-AS1 NADK2 antisense RNA 1 1.0608 0.0000
10 ENSG00000235869 ribosomal protein S26 (RPS26) pseudogene 1.0518 0.0000
63164 ENSG00000100077 GRK3 G protein-coupled receptor kinase 3 -1.7366 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000271858 novel transcript, antisense to CACNA2D2 -1.7398 0.0000
63172 ENSG00000266605 LONRF2P1 LONRF2 pseudogene 1 -1.7397 0.0000
63171 ENSG00000230798 FOXD3-AS1 FOXD3 antisense RNA 1 -1.7397 0.0000
63170 ENSG00000280120 novel transcript -1.7394 0.0000
63169 ENSG00000238961 SNORA47 small nucleolar RNA, H/ACA box 47 -1.7385 0.0000
63168 ENSG00000275111 ZNF2 zinc finger protein 2 -1.7376 0.0000
63167 ENSG00000181744 DIPK2A divergent protein kinase domain 2A -1.7370 0.0000
63166 ENSG00000232760 novel pseudogene -1.7369 0.0000
63165 ENSG00000271093 IGLCOR22-2 immunoglobulin lambda constant/OR22-2 (pseudogene) -1.7367 0.0000
63164 ENSG00000100077 GRK3 G protein-coupled receptor kinase 3 -1.7366 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

full download

Now loading...