Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773698

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773698


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M325Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000273940 RN7SL722P RNA, 7SL, cytoplasmic 722, pseudogene 1.7925 0.0001
2 ENSG00000235901 family with sequence similarity 190, member B (FAM190B) pseudogene 1.5850 0.0000
3 ENSG00000278551 RNU6-368P RNA, U6 small nuclear 368, pseudogene 1.5850 0.0006
4 ENSG00000200733 NA 1.2750 0.0000
5 ENSG00000263513 FAM72C family with sequence similarity 72 member C 1.2438 0.0000
7 ENSG00000199168 MIR374A microRNA 374a 1.1294 0.0000
8 ENSG00000207820 MIR545 microRNA 545 1.1266 0.0000
9 ENSG00000199920 RNU4-44P RNA, U4 small nuclear 44, pseudogene 1.1117 0.0000
10 ENSG00000235558 GUSBP17 GUSB pseudogene 17 1.0839 0.0000
63164 ENSG00000171823 FBXL14 F-box and leucine rich repeat protein 14 -1.8455 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000259405 ISCA1P4 iron-sulfur cluster assembly 1 pseudogene 4 -1.8475 0.0000
63172 ENSG00000264956 novel transcript -1.8473 0.0000
63171 ENSG00000168887 C2orf68 chromosome 2 open reading frame 68 -1.8471 0.0000
63170 ENSG00000125861 GFRA4 GDNF family receptor alpha 4 -1.8465 0.0000
63169 ENSG00000110243 APOA5 apolipoprotein A5 -1.8464 0.0000
63168 ENSG00000237669 HLA complex group 4 pseudogene 3 -1.8461 0.0000
63167 ENSG00000172366 MCRIP2 MAPK regulated corepressor interacting protein 2 -1.8459 0.0000
63166 ENSG00000096060 FKBP5 FKBP prolyl isomerase 5 -1.8458 0.0000
63165 ENSG00000274695 novel transcript -1.8457 0.0000
63164 ENSG00000171823 FBXL14 F-box and leucine rich repeat protein 14 -1.8455 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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