Human Omics database for
the Generation of iPS and Normal Cells

SHOGoiN Cell Methylome: GSM2773701

Methylation ProfileSHOGoiN Cell IdProject NameProject IdAssay IdProjectAssaySource CellTechnologyData
Project TitleAssay TypeSource Cell TypeSource OrganismSource Tissue Or OrganAssay TechnologyAssay Detection InstrumentationData Type

GSM2773701


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7020007000000000000000-780Sequence Read ArchiveSRP074598SRP074598_M328Single-cell DNA methylome sequencing of human preimplantation embryosMethylomeTEHumanEarly embryonic tissueBisulfite-Seq (PBAT)HiSeq 2500Sequence

Histogram (P-value of methylation rate)

Top 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-vaue
1 ENSG00000126010 GRPR gastrin releasing peptide receptor 3.5850 0.0000
2 ENSG00000249890 pseudogene similar to part of UDP glucuronosyltransferase 2 family protein 3.5850 0.0000
3 ENSG00000251685 UGT2B27P UDP glucuronosyltransferase family 2 member B27, pseudogene 3.5850 0.0000
4 ENSG00000226081 USP12PX USP12 pseudogene X-linked 3.4594 0.0000
5 ENSG00000225486 acid phosphatase 1, soluble (ACP1) pseudogene 3.3219 0.0000
6 ENSG00000227421 LINC01724 long intergenic non-protein coding RNA 1724 3.3219 0.0000
7 ENSG00000232446 pseudogene similar to melanoma antigen family B proteins 3.2024 0.0000
8 ENSG00000256756 TIMM17BP1 translocase of inner mitochondrial membrane 17B pseudogene 1 3.1699 0.0000
9 ENSG00000280013 heat shock transcription factor 2 binding protein (HSF2BP) pseudogene 3.1699 0.0000
63164 ENSG00000152795 HNRNPDL heterogeneous nuclear ribonucleoprotein D like -2.6944 0.0000

Bottom 10 methylated genes

RankENSGGene symbolDescriptionM-valueP-value
63173 ENSG00000143469 SYT14 synaptotagmin 14 -2.6957 0.0000
63172 ENSG00000265954 MIR4749 microRNA 4749 -2.6956 0.0000
63171 ENSG00000141756 FKBP10 FKBP prolyl isomerase 10 -2.6955 0.0000
63170 ENSG00000214851 LINC00612 long intergenic non-protein coding RNA 612 -2.6951 0.0000
63169 ENSG00000284536 MIR17 microRNA 17 -2.6950 0.0000
63168 ENSG00000284204 MIR19A microRNA 19a -2.6950 0.0000
63167 ENSG00000283815 MIR18A microRNA 18a -2.6950 0.0000
63166 ENSG00000283762 MIR20A microRNA 20a -2.6950 0.0000
63165 ENSG00000251284 speckle-type POZ protein-like (SPOPL) pseudogene -2.6948 0.0000
63164 ENSG00000152795 HNRNPDL heterogeneous nuclear ribonucleoprotein D like -2.6944 0.0000

SOM(Self Organization Map)

Expression around clicked position: full download

RankENSGGene symbolDescriptionM-valueP-value

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